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BTN3A1

Butyrophilin subfamily 3 member A1

Germline Genetics

Summary of germline evidence for BTN3A1 and cancer

  • Ensembl Gene ID: ENSG00000026950
  • Ensembl Transcript ID/s: ENST00000289361; ENST00000414912; ENST00000425234; ENST00000476549
  • Entrez Gene ID: 11119
  • HGNC Gene Symbol: BTN3A1

Genome-wide association studies

BTN3A1 maps to cancer-SNP associations according to the following annotations:

SNPLocusPosition (b37)Risk alleleRAFP-valueEffect sizeCICancerPMIDCatalogTADLSDEPICT
238_rs36109883 6p22.2 26133070 rs36109883-A 0.068507564 6E-12 1.2887794 [1.198871275-1.385430147] Squamous cell lung carcinoma 28604730 https://www.ebi.ac.uk/gwas/search?query=rs36109883 6:26140000-27100000 r2>0.8 (6:25684606-26631568) -
241_rs13201782 6p22.2 26651053 rs13201782-A 0.076363422 2E-8 1.220866 [1.139177984-1.308411621] Squamous cell lung carcinoma 28604730 https://www.ebi.ac.uk/gwas/search?query=rs13201782 6:26140000-27100000 r2>0.9 (6:26175866-27145341) -
191_rs80264589 6p22.2 26927602 rs80264589-A 0.079160056 1E-8 1.129989 [1.083615797-1.178346716] Lung cancer 28604730 https://www.ebi.ac.uk/gwas/search?query=rs80264589 6:26140000-27100000 - -
2497_rs13195401 6p22.2 26463574 rs13195401-T 0.0874 2E-9 0.0718 [0.048-0.095] unit decrease Breast cancer 29059683 https://www.ebi.ac.uk/gwas/search?query=rs13195401 6:26140000-27100000 r2>0.9 (6:26175866-26961280) -
2076_rs13195401 6p22.2 26463574 rs13195401-T 0.0874 2E-9 0.0718 [0.048-0.095] unit decrease Breast cancer 29059683 https://www.ebi.ac.uk/gwas/search?query=rs13195401 6:26140000-27100000 r2>0.9 (6:26175866-26961280) -
188_rs41266839 6p22.2 26409890 rs41266839-C 0.075741475 4E-9 1.1371641 [1.089526405-1.186884631] Lung cancer 28604730 https://www.ebi.ac.uk/gwas/search?query=rs41266839 6:26140000-27100000 r2>0.9 (6:26175866-26909096) -
187_rs3999544 6p22.2 26285867 rs3999544-C 0.438659584 1E-10 1.0787952 [1.054114572-1.104053769] Lung cancer 28604730 https://www.ebi.ac.uk/gwas/search?query=rs3999544 6:26140000-27100000 r2>0.2 (6:25790493-26741604) -
2374_rs71557345 6p22.2 26680698 rs71557345-A 0.93 4E-10 1.0869565 [1.04-1.14] (Oncoarray) Breast cancer 29059683 https://www.ebi.ac.uk/gwas/search?query=rs71557345 6:26140000-27100000 r2>0.8 (6:26189356-27145341) -
1953_rs71557345 6p22.2 26680698 rs71557345-A 0.93 4E-10 1.0869565 [1.04-1.14] (Oncoarray) Breast cancer 29059683 https://www.ebi.ac.uk/gwas/search?query=rs71557345 6:26140000-27100000 r2>0.8 (6:26189356-27145341) -
186_rs13191445 6p22.2 26015489 rs13191445-A 0.067737115 1E-9 1.1496384 [1.098926584-1.202690413] Lung cancer 28604730 https://www.ebi.ac.uk/gwas/search?query=rs13191445 6:26140000-27100000 r2>0.8 (6:25684606-26498758) -