Copy number variation
Chromosomes
| Chromosome | Bases covered | Avg. copy number | # genes | # gain | # loss | # no signal |
|---|---|---|---|---|---|---|
| 1 | 248,910,468 | 3.38 | 5352 | 6 | 7 | 5339 |
| 2 | 243,055,337 | 3.01 | 4046 | 0 | 0 | 4046 |
| 3 | 197,820,223 | 3.09 | 3098 | 0 | 2 | 3096 |
| 4 | 190,976,123 | 3.31 | 2562 | 0 | 0 | 2562 |
| 5 | 180,774,788 | 4.00 | 2855 | 0 | 0 | 2855 |
| 6 | 170,858,811 | 4.15 | 2900 | 0 | 0 | 2900 |
| 7 | 159,080,085 | 4.00 | 2876 | 0 | 0 | 2876 |
| 8 | 146,266,901 | 3.00 | 2384 | 0 | 0 | 2384 |
| 9 | 141,037,205 | 4.00 | 2317 | 0 | 0 | 2317 |
| 10 | 135,396,029 | 2.33 | 2259 | 0 | 46 | 2213 |
| 11 | 134,720,844 | 2.71 | 3198 | 0 | 0 | 3198 |
| 12 | 133,554,546 | 2.93 | 2803 | 0 | 2 | 2801 |
| 13 | 96,033,132 | 2.89 | 1217 | 0 | 203 | 1014 |
| 14 | 88,248,614 | 2.63 | 2241 | 0 | 7 | 2234 |
| 15 | 82,334,480 | 2.34 | 2074 | 0 | 25 | 2049 |
| 16 | 90,185,640 | 2.64 | 2342 | 0 | 0 | 2342 |
| 17 | 81,027,856 | 3.00 | 2895 | 0 | 8 | 2887 |
| 18 | 77,992,457 | 4.00 | 1126 | 0 | 0 | 1126 |
| 19 | 59,006,944 | 3.00 | 2906 | 0 | 0 | 2906 |
| 20 | 62,839,280 | 4.44 | 1317 | 0 | 0 | 1317 |
| 21 | 38,329,477 | 2.16 | 734 | 0 | 0 | 734 |
| 22 | 35,167,709 | 2.02 | 1260 | 0 | 5 | 1255 |
| Y | 55,817,045 | 0.24 | 481 | 0 | 427 | 54 |
| X | 155,062,550 | 2.00 | 2385 | 0 | 0 | 2385 |